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Hello,
I'm struggling to use podman, keep seeing
```
Error: creating build container: writing blob: adding layer with blob "sha256:560c024910bebac6b404791af28ebd48a8289303b8377d17b67ffdfe52754f2a…
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Hi Alessia,
Here is the command I run
###
nextflow run YAMP/YAMP.nf \
--reads1 /scratch/microb/xyz_1.fastq.gz \
--reads2 /scratch/microb/xyz_2.fastq.gz \
--prefix XYZ \
--mode QC -profile bas…
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Hi,
I have run your tool as a docker image on my local mac. It runs beautifully. Thanks.
However I need to run it on an HPC as a singularity container (cannot use docker)
I encountered a pyth…
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Provide an overview of containers with focus on singularity
We want to cover items relevant here which are
- What are containers
- What is singularity
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Titles:
- Managing bioinformatic software and pipelines
- How to do bioinformatics like a professional bioinformatician
- Reproducible and scalable bioinformatics for researchers
Prerequisite…
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Hi developers,
I converted the Docker image into a Singularity image as the HPC in my institute does not have Docker installed. However, when I try to run the Singularity image, I could not run it a…
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Hi Amina,
I cloned your code on ImmunOMICS, and tried to run `sbatch job.sh` with the paths changed. Below is the error output:
```
KeyError in file /beegfs/homes/achan/git/ImmunOMICS/snakefile, li…
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i Updated the mixer.sif container by singularity pull docker://ghcr.io/comorment/mixer:latest
but at the time of operation, display mixer1.2 not 1.3
INFO: Environment variable SINGULARITY_B…
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Hi,
I want to use it in the singularity containers but when I use the demand like:
```
singularity pull docker://pyprophet/pyprophet:2.1.3
```
It is not working. Do you know the correct cod…
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Hi.
I am unable to use docker on my computing system due to security reasons. Is there a way to start the session with singularity?
Thanks!