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Joey-
In your "Waste not, want not" paper you suggest that researchers interested in PCA and clustering ought to consider using variance stabilized data rather than proportions or rarified data.
DEs…
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https://mp.weixin.qq.com/s/0CZGjEzZRtLTyC1twL77eQ
ixxmu updated
2 years ago
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Hello - when using the microbiomeMarker package, I am receiving the above message whenever using functions from either the microbiomeMarker or phyloseq packages. When running more intensive functions,…
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Please post questions or discussion about the iSamples terms in this issue.
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I have got the network comparing two conditions using NetCoMi, but it shows ASVs name on the graph, how I can change it to genera name based on a column in taxonomy file and also I just want to mentio…
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Hi Amy,
I'm in Rob Knight's lab and excited to see (and use) your DivNet package — congrats on the _in press_ acceptance! I have a question regarding the use of the covariate matrix ("X") in the di…
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I am running the following code
# manova for all groups
t1$cal_manova(cal_manova_all = TRUE)
t1$res_manova$aov.tab
# manova for each paired groups
t1$cal_manova(cal_manova_paired = TRUE)
t1$…
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Hello ABySS team,
Thanks for the excellent tool-set! We (cc: @rob-p) intend to benchmark `abyss_bloom_dbg` for one of our lab tasks, and have some queries on which your input would be valuable.
…
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Hello the Bioscales project is in need of the term:
Soil Ammonia
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Hi,
just trying this, the test and install worked fine. thanks.
It seems my sample table isn't ok despite using the supplied script.
It looks like this, I've tried removing many samples, removi…