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Is there a way to use this with custom genomes that are acquired de novo?
Also, would it be possible to support [sylph](https://github.com/bluenote-1577/sylph) or [skani](https://github.com/blueno…
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Hello Team,
It seems that new cardinality estimator paper has two new estimators, the improved estimator and MLE estimator, better than the one originally proposed, see paper here: https://arxiv.or…
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(this is kind of a cross-repo issue, but I'm putting it here for now because code is evolving faster in charcoal than in sourmash :)
it would be valuable to properly separate out what support funct…
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IMO.
code is messy, is not as well tested as `gather`, it was never that much faster than gather, and doesn't support picklists. our goal should be to continue to make `gather` even faster :)
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Following the same process as sourmash-bio/sourmash#2410, we will benchmark sgc using the [examples provided](https://github.com/spacegraphcats/spacegraphcats/blob/latest/doc/01-running-spacegraphcats…
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As discussed in https://github.com/spacegraphcats/spacegraphcats/pull/214#issuecomment-448752498
Use cibuildwheel, example from sourmash: https://github.com/dib-lab/sourmash/blob/954d7292619eba9041…
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for example, the latest version of [betterplot](https://github.com/sourmash-bio/sourmash_plugin_betterplot/?tab=readme-ov-file#venn---plot-2--or-3-way-sketch-intersections-using-venn-diagrams) contain…
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## Hey, I made a binder!
And it wasnt as hard as I thought it would be! Maybe you want to make one too!
For context, this is the one I made: [Lab 14 Binder](https://github.com/hehouts/lab14_binde…
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let's track interesting tidbits for brainstorming...
practical plusses of sourmash impl --
* multiple databases can be searched all at once.
* public and private databases supported
from https…
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The accession BK010471 is for a crAssphage that is ubiquitous in human gut metagenomes ([link](https://www.nature.com/articles/ncomms5498)), and in particular is found in the 454 data set SRR073439.
…