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a `match_filename` column is being added to `--full-results` gather output in #298 so that the file matches standard sourmash gather output. However, we can't actually fill it in yet.
After https:/…
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I am in the process of determining whether sourmash is the right tool for my metagenomic analyses. I am mostly using ONT data at the moment. Similar to previous posts (e.g. https://github.com/sourmash…
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Dev docs: https://sourmash.readthedocs.io/en/latest/dev_plugins.html -
* suggest adding plugins to https://github.com/ctb/sourmash-mixers
* suggest plugins be added whenever new dependencies woul…
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since I'm rebuilding some of the SBTs and I've been doing a lot of indexing, I'm finding the overly verbose output of index and lca index to be annoying. I get pages and pages of :
```
Error in pa…
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### Description of the bug
The pipeline appears to have a bug in the follow-up process. When executing the nextflow pipeline, the terminal behaves as if the process has stopped and overlaps the proce…
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Command used:
```
nextflow run replikation/What_the_Phage -r v1.2.1 --setup -profile local,singularity -work-dir ./work --cachedir ./singularity_images
```
I have tried more than 10 times, del…
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- e.g., to be able to give an estimate stating something like "X% of reads from sample X recruit to the MAGs recovered from sample X" (or put another way, "How much of the starting read data made it t…
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they're pretty out of date and not super well tested. I think I'd do it better next time I have a use case for these kinds of functionality...
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Hi,
I was comparing the performance of `fastmultigather` when searching against a normal zip-type database and against a `Rocksdb` inverted index database. While running `fastmultigather` with `Roc…
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As discussed in https://github.com/spacegraphcats/spacegraphcats/pull/214#issuecomment-448752498
Use cibuildwheel, example from sourmash: https://github.com/dib-lab/sourmash/blob/954d7292619eba9041…