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Dzień dobry
Proszę o weryfikację zamówienia 910ddc60-4511-11ef-b6a9-d73126519331
Dlaczego Api nie zwraca w invoice_address_company_name zadnych danych a w danych do faktury w mailu jest imie i naz…
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Hi!
I'm interested in your work and I'm trying to reproduce the results on the data you released, but I'm having some problems.
1, The released sequence data contains `taxid`, and I used NCBI to …
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Could you please explain how to download annotation reports in *.jsonl format for a single organism or multiple organisms of a particular taxid using datasets?
The `dataformat` seems to have a comm…
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Hi, when I call function taxid_from_name to get taxid, I get some warnings.
my code:
import taxopy
ncbi_taxdb_dir = "database/ncbi_taxonomy"
taxdb = taxopy.TaxDb(nodes_dmp=f"{ncbi_taxdb_dir}/n…
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### Prerequisites
- [x] make sure you're are using the latest version by `taxonkit version`
- [x] read the [usage](http://bioinf.shenwei.me/taxonkit/usage/)
### Describe your issue
`taxonkit` …
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Hi
I am trying to validate the submission of contigs of **Wickerhamomyces sp.** with **taxid 1917781**. But it always gives this:
`ERROR: Organism name "Wickerhamomyces sp." is not submittable.`
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Now that `INDEX:DOWNLOAD_BLAST_DB` reads from AWS, the biggest bottleneck in the index workflow is `INDEX:MAKE_HUMAN_VIRUS_DB:GET_HV_DESCENDENTS`. This relies on the NCBI script `gimme_taxa.py`, which…
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Hi,
Thank you for this amazing tool - it has saved me a lot of time!
The issue I'm facing, however, is that the tool is only downloading 254 genomes, whereas my taxid file contains 954 taxids.
…
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Hi TobyBaril.
I would like to ask for you help concerning a RepeatMasker error.
We are trying to annotate a new genome assembly of Trypanosoma cruzi, whose NCBI Taxid is 5693. Earl Grey was inst…
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Hello,
I'm currently working with kraken2 using a dataset downloaded from NCBI (ERR4082713).
I've noticed that there's a read classified as taxid 1 in both the fastq_1 and fastq_2 files.
The c…