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**Submitting author:** @kdm9 (Kevin Murray)
**Repository:** https://github.com/kdm9/Acanthophis
**Branch with paper.md** (empty if default branch):
**Version:** 1.0.0
**Editor:** @marcosvital
**Revie…
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Hello
When I execute the workflow I get this error:
Error in rule RunDiamond:
jobid: 4
output: /home/biodf/Documents/Peyman/Taxonomic-Profiling-Diamond-Megan/2-diamond/BiocA2.0.sam
…
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Hi Nick,
Thanks for this tool. Is there any way to preserve the original GTDB taxids in the dmp files produced?
There is no kraken2 GTDB 16S database. However there is a DADA2 formatted database…
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The proposal that came out of #1773 regarding curating extracellular matrix proteins from proteomics experiments is detailed below.
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Thanks for developing these series of tools, and I want to ask what's the difference between filtered result and unfiltered result in taxonomic-profiling-minimap-megan.
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Hi
In the tutorial for Taxonomic-Profiling-Diamond-Megan, it says "Include all input HiFi fasta files (SAMPLE.fasta) in the inputs/ folder", but the files I received from PacBio are fq.gz. Should…
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This issue summarises the discussion that emerged at the London hackathon concerning a possible merge with [YAMP](https://github.com/alesssia/YAMP)
While MAG focuses heavily on assembly, YAMP is as…
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### Description of the bug
As suggested by @Midnighter https://nfcore.slack.com/archives/C031QH57DSS/p1673863932137969?thread_ts=1673858047.865519&cid=C031QH57DSS
(i.e. classification - who is the…
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Hi, I'm Jaebeom Kim working on metagenomic classification.
I want to ask a question about reference databases used in the taxonomic binning challenge.
I can find three reference sequences on the C…
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### Description of the bug
Maybe there is a misunderstanding about what particular parameters of the pipeline mean but I think the way setting the parameter `--save_runmerged_reads` currently perform…