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First of all, thank you for this and other NextStrain packages! They are making the process of visualizing my project significantly smoother.
### Current Behavior
I'm not sure if this is expected …
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Is there a publication associated with this work? Could a link to it please be added to the repo?
If not, what is the difference between pan-MeV and the pan-MeV smart schemas?
Thank you
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First of all, thanks for your wonderful tool ! It's really helpful for my research !
I build a vg graph from a collection of virus strain genomes (~10000bp per genome, some are very similar) , and …
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Hi, Thanks for your nice pipeline!
ViWrap 1.2.1 is encountering an error while running the command
```
./ViWrap/ViWrap run --input_metagenome /P/release/C/1-5_assembly/final_assembly.fasta --inpu…
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Antigenic shift depends on virus reassortment, a term we should add to VIDO. I am currently thinking something like this:
_virus reassortment_ =def Genetic recombination involving the exchange of …
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When I'm using `krakenuniq-download` to download refseq genomes, every so often it will raise an error "Error fetching [ftp link]. Is curl installed?"
curl is definitely installed. That can't be th…
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Hello,
After running lumpy_smooth on a sample bam file I got the following warning message:
Warning: only 392 elements in distribution (min: 1000)
I figured out it comes from pairend_distro.py that…
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Hi Rob,
I was really excited to see that someone is doing a comparison of different prophage tools. If you are still open to adding more tools for comparison, I hope you try my tool [Cenote-Taker 2…
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### Discussed in https://github.com/facebookresearch/esm/discussions/340
Originally posted by **igortru** November 4, 2022
please, add protein sequence crc64 column to metadata file
(or any…