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Hi all,
My download directory matches that currently specified on the AlphaFold read me but during runtime I get the following error:
```
stderr:
I1115 22:08:36.661796 23135168587584 utils…
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Hello! I tried AlphaFold 2.3.2 on [A0A023GS29](https://www.uniprot.org/uniprotkb/A0A023GS29/entry).
The error message I got:
``alphafold/relax/amber_minimize.py, line 139, in _check_residues_are_w…
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Hello.
Thanks for this awesome work.
I am trying to model the complexes of a few hundred peptides with a multichain target.
I couldn't figure out how to use multichain custom MSAs. Could you please…
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Thank you for making this excellent project open source!
Is Chroma able to do protein folding, as in, provided an amino acid sequence with no structural information (i.e. a FASTA file) generate a 3…
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I have a simple question that I can't seem to find the answer to. After predicting structures through AlphaFold, is it better to use the top ranking structure (assuming it has no structural flaws) or …
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Hi,
I was wondering if the project could be integrated into a singularity installation of AlphaFold2. If yes, how would one go about achieving it?
Best,
Pranav
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I am getting this error (module 'jax' has no attribute 'xla') while running the alphafold. Can anyone suggest the solution.
![alphafold problem](https://github.com/google-deepmind/alphafold/assets/15…
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In default Foldseek uses its local 3Di+AA strutural alignment ...
related question:
is it possible separate this function into standalone call?
I have 2 AA sequences + 2 corresponding 3Di sequen…
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Dear alphafold collaborator,
Thank you for giving us such wonderful tools! I know the relaxed model is modified by Amber relaxation procedure. But I'm not in this specific field, so I'm wondering …
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Hi,
I've been trying to map these proteins from local pdb files based on model confidence like AlphaFold (90-100 dark blue, 70-90 cyan, 50-70 yellow, 0-50 orange). The plddt scores per residue are fo…