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Hi!
I have somewhat random question:
I work with intracellular immune receptor proteins that carry a highly variable but also conserved domain ([NB-ARC domain](https://journals.plos.org/plosbio…
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Allele description (manadatory) is blank on 64113 lines (deletion missing?)
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Hi, I recently came across ClearNLP and decided to give it a try.
I've used other NLP frameworks in the past and I am positively impressed by the overall quality of yours.
I've found some little bugs …
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I'm trying to convert 3Di tokens from ProstT5 and the associated amino acids into foldseek databases using generate_foldseek_db.py. However, when I try this, I receive an error like this `Cannot open …
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Hello,
I'm trying to run panaroo but this problem came out:
subprocess.CalledProcessError: Command 'cd-hit-est -T 10 -i /home/agargam/TFM/Archivos gff/Archivos_GFF/CV_Schmerer_Salmeron_Carlos_Gr…
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Make plots of the distribution of effects of:
- all amino-acid mutations
- amino acid mutations observed at least once in a natural GPC
- amino acids mutations observed at least N times in a natur…
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I can generate sequences of str:
```
def generate_sequence(length):
return ''.join(random.choices(AMINO_ACIDS, k=length))
start = time.time()
AMINO_ACIDS = 'ACDEFGHIKLMNPQRSTVWY'
LENGT…
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Hi @dportik ,
I have an issue concerning the `MAGContigNames` rule. It is the same one that the issue #84 , but the author solved it without any explanation.. And so, the `8-summary` is empty. I …
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Hi,
I am trying to run your notebook `1 - MHCXAI usage and instance based explanations`. I am running into the following error:
`FileNotFoundError: ../transPHLA/TransPHLA-AOMP/transPHLA_train_len…
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The following additional analyses will be carried out to address reviewers comments:
1. Create a correlation plot for functional effects measured in 293T cells between library A and library B after…