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### Background
- Windows 10
- mingw compiled htslib (latest develop)
- msvc 2017 (main program)
### Problem:
My program cannot link / use headers: `bgzf.h` and `kstring.h` since they `ssize_t…
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```File "/home/travis/virtualenv/python3.6.7/lib/python3.6/site-packages/pylazybam/bam.py", line 746, in __init__
271 self.bgzf_file = BgzfWriter(filename=Path(file),
272 File "/opt/python/3.6.7…
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Hello, I am just starting with psyam. I get an error running this code:
import pysam
samfile = pysam.AlignmentFile("scenedesmus_sorted.bam", "rb", index_filename="scenedesmus_sorted.sam.gz.tbi")
…
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I got some errors when I was compiling htslib in ubuntu 20; Please help
gcc version gcc (Ubuntu 9.3.0-10ubuntu2) 9.3.0
$ git clone https://github.com/samtools/htslib.git
$ cd htslib
$ autoheader
…
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```
[gzu2@monolith3 any2bed]$ grep -i ^bio Cargo.toml
bio = {version = "0.30", default-features=false}
[gzu2@monolith3 any2bed]$ cargo build
Compiling hts-sys v1.10.2
error: failed to …
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Dear All,
I am trying to use VEP docker image for predicting protein interactions of my variants(.vcf file).
Here is what I tried, within my docker container,
`./vep --cache --offline --format v…
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#### Are you using the latest version of [samtools](https://github.com/samtools/samtools/releases/latest) and [HTSlib](https://github.com/samtools/htslib/releases/latest)? If not, please specify.
`…
JNisk updated
4 years ago
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#### Are you using the latest version of [samtools]:
```
samtools 1.9
Using htslib 1.9
Copyright (C) 2018 Genome Research Ltd.
```
and (build from sources):
```
samtools 1.9-210-g72d140b
Usin…
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Hi!
When trying to polish some nanopore data`flye --polish-target out_flye/30-contigger/contigs.fasta --nano-raw allpass.fastq.gz --iterations 1 --out-dir out_flye/polish --threads 40`, I get the f…