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Thankyou for building the new tool to complement Orthofinder.
The features are currently required in NCBI feature format. Is it possible to implement a feature to use a local GFF file instead as an i…
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**Improvement Description**
It should be possible to download the QIIME compatible version of Silva and construct reference phylogeny and alignment for SEPP to enable 18S analyses.
**Questions**
…
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j'ai ajouté le nouveau taxon data.canadensys.net/vascan/taxon/34082
Odontarrhena americana
L'auteur russe sépare les éléments de l'est russe et de l'Amérique du Nord adjacente au sein de O. obovat…
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Spin out from #855 which was specifically for ``test_NCBIXML.py`` but has the same root cause.
Some of the test XML files contain a non-ASCII accented character:
```
$ grep $'\xc3\xbc' PhyloXML…
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## on which platform/server? (Windows? Windows Sublinux? MacOS? Ubuntu? etc.)
Ubuntu 20.04 Linux
## MitoZ version?
3.6
## How did you install MitoZ? (e.g. Docker, Udocker, Singularity, Con…
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Hello!
Firstly, I'd like to express my gratitude for providing phyloVelo!
I'm currently intrigued by the prospect of reproducing the phylogeny tree of C. elegans for the AB lineage using the pseu…
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Hi Kamil!
I am trying out SPloidyPlot and could use some help troubleshooting the outcome!
I used following command to generate the smudgeplot:
```
FastK -v -t4 -k31 -M16 -T4 *gz -NFastK_Tab…
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Hi,
tip labels containing special character (tested with "-") will be quoted in the output tree of sumtrees.py. However, if such tip label contains also character _, this will be replaced with space.…
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Hi everyone，
Do I need to call EDTA's conda environment when running panEDTA? conda activate EDTA
Thanks very much
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Dear Chi Liu
I am trying to run a code
t1$plot_diff_cladogram(use_taxa_num = 200, use_feature_num = 50, clade_label_level = 5,
group_order = c("IC", "MC")).
I am getting …