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Hi,
I used Arthropoda.fa (from https://bioinf.uni-greifswald.de/bioinf/partitioned_odb11/Arthropoda.fa.gz) for BRAKER
` --prot_seq=Arthropoda.fa` and got the following warnings:"Assuming this is …
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Some comments on the manuscript in `https://github.com/marccanby/linguiphyr/blob/main/paper/paper.md?plain=1`
As a proviso, I'm a proponent of a very different framework (Bayesian approaches) and …
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Hi, I met different results when I run busted analysis with command line and web(datamonkey.org).
My command line has the same parameters with web as follow : `hyphy busted --alignment pal2nal_gapou…
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Dear MPSE developer,
Recently I try to use MicrobiotaProcess to do microbiome data analysis. This is a very nice R package as far as I know.
So, I installed it and learn it based on the [documen…
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We want to understand the genetic resolution of clusters found in our embeddings compared to expert- and model-defined cluster annotations (e.g., Nextstrain clade, Nextclade pango lineage, etc.). Spec…
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Proposal for a sublineage of BA.5.2.1
Earliest sequence: 24.04.2022 (Israel)
Countries detected: mostly Israel (24 %), Germany (23 %) and Denmark (18 %) but also Australia, Austria, Belgium, Brazil,…
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I have been thinking about how to make all of the `taxa` classes most useful and I think I have come up with a way to reorganize things that will make things more natural and R-like, while increasing …
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see:
https://twitter.com/SimonJGreenhill/status/1711127649131925681
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Hi,
I am trying to figure out the right order to set up populations for calculating D statistics with the f4 function. The interpretation of these results will depend on how D is defined in the pac…
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### Author(s) of proposal
M. M. Ponce and M. A. Scataglini
### Name of taxon
Cheilanthes Sw.
### Rank of taxon
Genus
### Approximate number of species affected
70
### Descripti…