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Only for required genome fasta / subset for HLA to make mapping much faster and less memory intensive.
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Hello,
I was wondering if there is a minimum length requirement for scaffolds somewhere hard-coded in the program?
I performed a test where I compared the length of genomes before running Panseq…
MrOlm updated
7 years ago
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Hallo.
Can you help me?
anna@anna-G3-3590:~$ prokka
Name:
Prokka 1.14.5 by Torsten Seemann
Synopsis:
rapid bacterial genome annotation
Usage:
prokka [options]
General:
--help …
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**Describe the bug**
Hi I am running the pipeline in an SGE environment, but running into issues at the encode_task_filter step with virtual memory.
Currently it seems the default memory request f…
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# Final approach before data analysis
## Objective
The main objective of this study is to demonstrate a correlation between high levels of host contamination (HC) and poor assembly and binning per…
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Hi,
after some issues with Archaea reconstructions not predicting methanogenesis we tried to debug with the example provided in the docs. The exact assembly used in the example has been removed fro…
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## Bug report
In @nf-core we recently [removed `name`](https://github.com/nf-core/modules/pull/6600) from our conda `environment.yml` files. We knew that there was an issue that affect CI tests wi…
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Dear Anton,
Hope you are well. I am trying the current mosaic code to solve a pretty complex region that Flye alone has not been able to solve correctly. However I can see a few errors when testing…
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Dear Roary author and support team:
I use a RHEL 7.9 server to test Roary container.
I use command 'docker pull sangerpathogens/roary' to acquire an image "docker.io/sangerpathogens/roary "
In…
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I did run CIRIquant with command:
CIRIquant -t 20 -1 /data/circRNA_fastq_files/2_S2_L001_R1_001.fastq.gz -2 /data/circRNA_fastq_files/2_S2_L001_R2_001.fastq.gz --config /dmel_ENS_BDGP6_myCIRIquant.…