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Hello,
I'm running inferCNV on 10X ST data wherein a spot represents a cell. I've gotten to step 3, but it throws an error about x not having at least 2 dimensions. Please see screenshot.
I saw a…
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see http://monarchinitiative.org/gene/NCBIGene:100072706
for example,
there should be plenty of homologs as this is pitx1
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When reviewing variants, it is important to be able to evaluate the role of the variant, but also how well the gene matches to the entered phenotypes. I imagine 2 things to do:
1. In the variant re…
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Hello,
I launch DRAM on 300 MAG and DRAM stops after about 200 MAG :-( (see error message below). Is there a way to "restart" DRAM from where he stops ? (if I re-launch the DRAM command it does not…
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Current loading procedure:
- load mRNA from fasta
- load peptide from fasta, link to mRNA via regexp
Problems with this strategy:
- we don't know locations of genes on scaffolds
- we can't prop…
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Nico noted in [phenio #33](https://github.com/monarch-initiative/phenio/issues/33#issuecomment-1375896806) that we should be be mapping anatomy terms to Uberon rather than using the species specific o…
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Hi all,
I am wondering if we can disable the popup textbox asking for a name of user's data when launching cellxgene. The name might not be important for users, and a random name might work. The po…
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Dear Team,
We installed phenopolis to our HPC and tried to use run_VEP.sh and postprocess_VEP_json.py scripts prior to import json to mongodb.
run_VEP.sh script is pointing to server. Could you …
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Many terms
MONDO:0013519
A dyskeratosis congenita that has_material_basis_in an autosomal recessive mutation of NOLA2 on chromosome 5q35.3.
NOLA2 = NHP2
MONDO:0009136
Definition
A dyskera…
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We want to be able to load the RASTTk annotations to anvio to compare the annotations used in the model to what Michelle got from the pangenome.