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Hello,
I am using briekit-events to extract splicing events from the human gencode v25 annotation file in gff3 format, which has over 55k genes. However, the output file has alternative splicing ev…
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@vkartha
How may i remove the Rik genes from DORC gene listing before plotting heatmap.
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Hello
I try to run barrnap to identify rRNA from a eukaryotic genome , the commad as follow:
barrnap --kingdom euk --threads 20 --outseq rRNA.fasta < chr1.fasta
After running, we got followin…
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While adding some tests to check for the GFF output (in order to fix #18) I noticed that the start score of some genes were deviating from the Prodigal reference results. This was not verified before …
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**Is your feature request related to a problem in the current program to new available techology or software? Please describe and add links/citations if appropriate.**
Our CLGs have started using T…
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Hi!
First off, thank you for this analysis tool!
I am analyzing some Perturb-Seq data and have followed the vignette. I ran Mixscale_Scatterplot and interestingly the perturbation score seems p…
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# ov.utils.download_pathway_database()
pathway_dict=ov.utils.geneset_prepare('genesets/WikiPathways_2019_Mouse.txt',organism='Mouse')
rnk=dds.ranking2gsea()
gsea_obj=ov.bulk.pyGSEA(rnk,pa…
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Hi,
I have performed the enricher() function on my data but in the GeneRatio column, the denominator does not correspond to the number of inputs genes. Indeed, results show that there are 23 genes…
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I would like to train a CellTypist model to identify certain cell types with a specific gene set. I tried feeding the function a list of genes using the 'genes' argument but it still trained using all…
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From @pnrobinson on email
In the Exomiser, HPO website, Monarch Web app, we find the same medical error.
Orphanet associated some diseases with tons of genes
[ORPHA:91387](https://hpo.jax.o…