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For many circular genomes, gene annotations in NCBI RefSeq overlap the "end" of the linear representation, i.e. the arbitrary nucleotide chosen to be "position 0" for the linear representation of the …
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Dear developers,
Thanks for creating CircMiMi, it's an easy to use and very useful tool. However, I am having problems creating an hg19 reference genome instead of hg38. I get the following error:…
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**Describe the bug**
When the user switches from one tab to another (especially a tab that has a lot of components to render) there is a delay in loading that tab.
**To Reproduce**
Click on a tab…
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It's expensive to re-make the NCBI database and re-generate the core genome alignment every time a build is updated.
- [ ] cache database tables, already aligned assemblies
- [ ] query only newly …
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## Expected Behavior
No error.
## Current Behavior
```
Not enough GFF files are provided. Some results might be omitted
tmpFolder/15806226240676100088/createsetdb.sh: line 130: 9468 Segmentati…
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I am ruining MIPGEN with very basic options, but in my output ....picked_mips.txt file does not contain any number in Ext_Probe_copy & lig_probe_copy getting only 0.
(../MIPGEN/mipgen -regions_to_s…
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Hi,
I am in charge to find presence of specific genes in 600.000 Salmonella's genomes.
I used COBS on few genomes for training
But I don't really understand the output...
I copied a subsequence (5…
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We are trying to add support for multiple genomes as to start this project was only working for human GRCh38.
Work has been done at the loading step on Apr 5, 2022 to support on top of human GRCh38…
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Hi,
Is it possible to use cnvnator for analyzing datasets where the reference genome is not in the list of valid genomes (NCBI36, hg18, GRCh37, hg19, mm9, hg38, GRCh38)?
When I tried it with ba…
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Hi Bernat,
Thank you for the great tool. I would like to create the karyotype for a new rat genome mRatBN7.2/rn7 - NCBI released Nov 2020 but UCSC just recently: http://hgdownload.soe.ucsc.edu/gold…