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**[Original report](https://bitbucket.org/whatshap/whatshap/issue/131) by madhubioinfo (Bitbucket: [madhubioinfo](https://bitbucket.org/madhubioinfo), GitHub: [madhubioinfo](https://github.com/madhubi…
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sga assemble crashed with this message:
```
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
WARNING: [Edge limit reached for vertex when loading graph]
…
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I'm following the tutorial and successfully ran the biobox/velvet example with the test dataset. When I try to follow the last step (switch to biobox/megahit) I encountered this error.
```
> biobox r…
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Dear All,
I'm new to pacbio assembly and I have several questions about canu. I therefore post my questions here and any ideas about these questions are welcome.
I have to assembly an heterozygous…
WIAIW updated
7 years ago
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The MHAP overlap file size veries on different input, and I want to know the reason for this. I set the genomeSize to 200M on two different fasta input, both contains 1500000 sequences, but the on one…
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I have successfully installed FALCON-integrate and I can fun "make test" successfully.
However, when I fun on my own genome, I have the following error:
"Task Fred{'URL': 'task://localhost/build_pdb'}…
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Hello,
I am using the current linux-amd64.
Canu keeps failing at the filterCorrectionOverlaps with no error output. Or it just stops...
I have a large memory box of 2TB.
commands I have tire…
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Hello
When I try to use MetAmos for processing of single .fastq files, the pipeline fails to link the file with single reads to `lib%d.seq` (**EXAMPLE 1**) and crashes subsequently, issuing a warnin…
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So in my continuing efforts to make your life difficult - I'd like to map the contigs obtained from de novo (pathogen discovery pipeline) or really any de novo assembler and map them (and unassembled …
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Hi
The `make_fasta_from_fastg.py` script pops an error when I try to apply it to a Megahit produced fastg file. It is asking for a bam file while that command should not require one based on your e…