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Hello:
RFMIX v2.03-r0 - Local Ancestry and Admixture Inference
(c) 2016, 2017 Mark Koni Hamilton Wright
Bustamante Lab - Stanford University School of Medicine
Based on concepts developed in RFM…
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Hello, I have problem about the sorted and duplicated position when conduct QUILT_prepare_reference.R
My code is: (according to UILT_hla_reference_panel_construction.Md)
oneKG_vcf_name=CCDG_14151_B0…
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hello xpehh users，how to understanc alleles must be coded 0/1 only?
does it means no missing in ref vcfs?
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**1. What were you trying to do?**
I' m trying to index the vg graph using the "vg index" command.
**2. What did you want to happen?**
I want to get the xg and gcsa files which can be used to…
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Hi
My question may be out of scope of your program.
In the pipeline you mentioned
`shapeit --input-vcf VCFfile -M genetic_map.txt --output-graph VCFfile.graph`
I faced with this error
`ERROR: You…
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(summarizing @arahuja on the subject)
**Simple Version**
When many SNVs are found close together, consider dropping them under the assumption that something may have been wrong with the reads there. …
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Dear Shengcheng,
First of all, I would like to express my appreciation for these epic and stable tools – they run smoothly and quickly.
On my occasion, my genome is diploid, and I have tried usi…
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Hello,
I am facing a very unexpected result from MSMC2 and am very confused about what happened. Any insights would be helpful!
[Lingonberry_cross_coalescence_refgenome_minus.pdf](https://github.c…
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Hello -
I Installed the package via conda successfully, but when I type the command I get an error. Thanks for any suggestions.
Scott
(msaconverter) [sedwards@holy7c24101 msaconverter]$ msac…
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I have managed to generate a minimal bam file that reproduces the issue.
First of all, you have to download the mini input.bam file from this dropbox link: https://www.dropbox.com/sh/xae79hanumpire…