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It would be great if there is an easy way to export condense seg ratio file that can be import to IGV. cause some users are requesting this feature. Sincere thanks!
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For long genes, the sashimi plots produced are hard to visualize. Anyway those plots could be scaled to reduce the intron width vs exon width?
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Would this be possible? The YC tag colors the entire alignment, whereas the MM/ML tag only typically color individual bases.
It would be great to be able to visualise both simultaneously.
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Hello there
Thanks for having developed this tool
I'm having the same problem as many but I cannot solve it (I already put this message at the end of an old thread but I don't know if you have seen …
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Dear,
This is a very interesting tool and I'm busy exploring how it works. However, it seems to struggle with replacing in some reads. In the image, you can see the result in IGV. After using bamsu…
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Currently `refNameColors` is part of the assembly config, and determines what color a refName is displayed as in things like the linear overview bar or circular arc label. This was done before we had …
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Open location from URL by creating a server !
dridk updated
8 years ago
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Hallo,
I am using Pisces for variant calling in my TST170 data and have a question regarding the AD and DP values in the vcf.
Why is the DP value greater than the sum of the two given AD values fo…
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Hi, could you please help me understanding how SU is counted in Lumpy and SVtyper?
I run smoove with the following steps:
1. samblaster -> 2.smoove call -> 3.smoove merge -> 4.smoove genotype ->5.…
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This is an example from drprg, Michael's data. Pandora discover and map output here: `/hps/nobackup/iqbal/mbhall/drprg/paper/results/amr_predictions/drprg/illumina/PRJNA436454/SAMN08626350/SRR6824314`…