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https://wustl.app.box.com/file/928353313059
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Do a sweep through `pandora` window and kmer sizes and see which result in the best drprg performance for Illumina and Nanopore
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Hi,
I am trying to run the workflow for datasets of cell lines obtained with the TSO500 panel on a Nextseq 550 device.
It gives an error for the varlociraptor call stating: `Error: samples.tumor.…
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Data: miseq (FR3)
File: 5 fastq file
Result: CDR3 seq was the same for the five first clones
I think there's a problem.What do you think?
Thank you for your help!
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Hi there, I encountered this error when running LAPA on single short read BAM file. What do you advise to solve this? Thanks!
```
lapa --alignment ${illumina_bam_dir}/${bamfile} --fasta ${refere…
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**Description**
Please can we investigate if there is additional LIMS/tracking support available for HiC tracking and submissions, to allow for a single HiC submission up-front from the SSR.
Current…
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### Ask away!
Hello,
My workflow seems to be failing as a result of what I think is a samtools error.
**Command:**
minimap2 -t 4 -ax splice -uf -p 1.0 "genome_index.mmi" "seqs.fastq.gz" …
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Hi,
can you point me to where the MBARC error profile for ART is coming from? I could not find any information on that.
In any way, I think it introduces way to high error rates that are more co…
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### Project short name:
DevelopmentalOriginsNeuroblastoma
### Primary Wrangler:
Ami
### Secondary Wrangler:
Ida
### Associated files
* Google Drive:
https://drive.google.com/drive/folders/1Yu5Ao…
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```
Assembling contigs and long reads with miniasm (2017-07-24 18:16:16)
Saving to /miniasm_assembly/01_assembly_reads.fastq:
61,957 long reads
Finding overlaps with minimap...
success
…