-
As visualization is not straightforward we strongly feel that it needs prototyping. Thus, we have decided to implement it as plugin for IGV.
We need to make some architectural decisions, so we need y…
-
## Expected Behavior
I wish to have multiple cluster runs, each with a different value of min-seq-id value. Ideally, the resultant representative form hierarchical subsets, i.e. representative sequ…
-
Hi,
Thank you for the tool. I am using it for isoform quantification. As a test run I am testing it on one sample from 10xV2.
The command that I am using
`scasa --fastq ERX3806131/4861STDY74…
-
**Description**
**Sub-lineage of:** KP.3.1
**Earliest sequence:** 2024-4-28, Spain, Basque Country — EPI_ISL_19095498
**Most recent sequence:** 2024-6-21, Japan, Saitama —EPI_ISL_19218509
**Contin…
-
Can we use the new Galaxy Data Manager framework to make it easier to manage the BLAST databases configured via *.loc files?
https://wiki.galaxyproject.org/Admin/Tools/DataManagers/
-
## 🐛 Bug
I am currently trying to analyze BCR sequencing data by using IMGT HiV-QUEST data before using immunarch for further analysis. I should note that I am analyzing BCR data from Rainbow Trout (…
-
Hi!
It is the first time I am using figaro. I am not an usual user of Python, so that's why I am asking help. I don't know what to do with this output and how to interprete it. I was using figaro t…
-
Main points:
* Expand https://github.com/pyani-plus/pyani-plus/blob/main/pyani_plus/private_cli.py with another function ``log_dnadiff`` (like the existing ``log_anim``, ``log_anib``, ``log_fastani…
-
Hey all, I'm using interproscan to annotate a genome as part of the funannotate pipeline. I'm using 5.68 with the command:
interproscan.sh -cpu 32 -t n -f xml -iprlookup -goterms -pa -verbose \
-i…
-
I am a computer architect, interested in benchmarking workloads for the sake of comparing different CPUs. I have used BLAST in my workload set in the past, but I would like to upgrade to what research…