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Dear developers,
Thanks for developing this awesome tool! I have tried to run it recently and encountered an error message: ERROR: RepeatMasker results not found in necat_ragtag.fasta.mod.out!'
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The RepeatMasker runs for a long time and its job was stopped for maximum execution time on the queue system on HPC cluster. Could we find out a solution to improve the efficiency of RepeatMasker and …
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Hi,
EDTA is failing right when the classifying pipeline initiates. It gives me a few erros and fails. There are so many errors that I can't tell exactly what the problem is... It seems it can't fin…
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**Operating system**
Linux on HPC
**Package name**
lima 2.4.0, conda environment was newly updated
**Conda environment**
What is the result of `conda list`?
```
(base) [user@608-4 Analysi…
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Hi, I have freshly installed funannotate through conda, then removed augustus by using "conda remove --force-remove augustus". After that I locally installed augustus 3.3 through apt-get and redirecte…
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Order (orient) identified chrY contigs on the basis of the contig-to-reference alignments relative to T2T.
Contigs should be renamed; coordinate with Pille about naming convention.
Pille:
```
Co…
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Hello. Sir
I have updated EDTA to 1.9.7 as you Suggest. Then some errors come:
First: I rerun the analysis based on the old results, apparently it cannot combine the new an old results.
Then I t…
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The lasted version could not run neither with internal samtools (v1.10) nor with external samtool (v1.14).
Tue Dec 7 00:15:09 CST 2021: Full log file is: /workingdir/test.virusbreakend.vcf.gz.vi…
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**Are you using the latest release?**
`funannotate v1.8.12`
**Describe the bug**
The logfile for funannotate predict seemed to show that everything ran ok. But the outputs (.protein.fa and .gff) …
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Copied from https://github.com/rmhubley/RepeatMasker/issues/50#issuecomment-766803634 by @Tiramisu023:
> I also had another problem when I finished the installation successfully and tried to start …