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Hello,
I've been trialing Metagraph for some work on my current project. I just had a few quick questions regarding certain functions.
First, from the wiki regarding --count-width, if the value …
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Hi, I'm using Bismark (0.23.0) in Snakemake pipeline to process many of the WGBS. I've noticed that some of my BAMs have fewer reads than expected, and ambiguous/unaligned FASTQ files have invalid for…
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## Bug Report
Hi GATK team,
I've just been running some variant calling benchmarks on a set of bacterial isolates and I was trying to understand how GATK HaplotypeCaller chooses which re…
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I have had some issues with names previously, trying to concatenate multiple datasets to find UCE loci, and had mostly overcome that.
However, I am having an issue with phyluce_align_get_gblocks_tri…
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Hi again :)
I'd like to reuse the same real datasets you used in the paper for my benchmark.
I was wondering how exactly you go from a set of (ONP/Illumina) reads to input pairs to run WFA/globa…
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### News
- Conferences
- CVPR 2022: 6.19 ~ 24 (New Orleans)
- 대기업 중심의 AI 투자 관련 (SK, LG, KT 등등)
- [스캐터랩, 정부와 AI 윤리점검표 개발 추진](https://n.news.naver.com/mnews/article/092/0002259047?sid=105)
### …
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I would like to align 150 bp paired-end reads with Bismark v0.23.1. I use a HPC cluster with SLURM. I got this error in align process:
```
Bowtie 2 seems to be working fine (tested command 'bowtie…
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I'm running pasta with a small (330KB) sequence thus:
`python pasta/run_pasta.py --num-cpus=7 --aligner=PROBCONS --merger=MUSCLE --tree-estimator=RAXML -i simulated_reads/HLA-B.fa --alignment-suffi…
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Dear all,
I have samtools and bowtie2 up-dated and installed the R packages required (tidyverse / plotly) as well.
I don't know from where the header error could came from I have never encountered…
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I personally manually created an edge case which will lead to false duplication be marked
please see the test data
[test.data.gz](https://github.com/samtools/samtools/files/6217134/test.data.gz)
…
wulj2 updated
2 years ago