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Hi!
In my first metagenomic study, I have used Kaiju v.1.8.2 for taxonomic classification and using Progenomes database.
Nevertheless, I would like to know if is there any availble kaiju progeno…
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**Is your feature request related to a problem? Please describe.**
Filter by the microbial source isn't practical enough.
**Describe the solution you'd like**
Change microbial sources to adopt G…
AdeBC updated
2 years ago
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Hello,
I wonder if `ancombc2()` could analyze ASV or OTU-level abundance table and GENE or PATHWAY level abundance table (from shotgun metagenome analysis).
In my test running of `ancombc2()`, `…
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**Submitting author:** @ParkvilleData (Babak Shaban)
**Repository:** https://github.com/ParkvilleData/MetaGenePipe/
**Branch with paper.md** (empty if default branch):
**Version:** v.1.0.0
**Editor:*…
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We have a teaching collection with multiple types of specimens. Today, I went to pull a list of the botany specimens in our teaching collection by selecting "Collection: CHAS:Teach" and "Kingdom=Plant…
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### Description of feature
We have been working on how to assign a UNITE Species Hypothesis (SH) to our fungal ITS sequences and come up with a procedure to, in short, match sequences to the database…
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**Submitting author:** @salzberg (Steven Salzberg)
**Repository:** https://github.com/fbreitwieser/krakenuniq
**Branch with paper.md** (empty if default branch):
**Version:** v1.0.3
**Editor:** @lpan…
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### Description of feature
Kraken 2 is the newest version of Kraken, a taxonomic classification system using exact k-mer matches to achieve high accuracy and fast classification speeds. This classifi…
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### Description of feature
Kaiju is a program for sensitive taxonomic classification of high-throughput sequencing reads from metagenomic whole genome sequencing or metatranscriptomics experiments
…
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Hello,
I have a set of meta-RNA-Seq fastq data from bacterial communities. They should be depleted for rRNA, but I want to test the performance of the depletion step.
I have analyzed two paired-…