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Please include:
- the version of pheweb you're using, gotten from `pheweb -h`. If you're not on the latest version, consider upgrading with `pip3 install --upgrade` and trying again.
Hello.
I …
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Hi Sam, I have been struggling to use PRSice on BGEN files for a while now - I asked you some questions in previous threads (https://github.com/choishingwan/PRSice/issues/214 and https://github.com/ch…
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Read v2 drug codes are not available in Athena nor NHS tables. We should obtain this information from another source (note: for this issue help expected from the collaborators).
Ideally map to a va…
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I would like to use SAIGE with whole-exome data. The data are in plink format and contain missing values. I performed step 1 with no issues. For step 2, I understand I cannot use plink files. I reform…
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All the linear distorsion corrections are done with the coeff.grad file of the Skyra from the Montreal Heart Institute in process_data.sh.
## Description of the enhancement
The coeff.grad file …
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I haven't pinpointed where the issue is, so the title of the issue may be misleading, and it could be something on our cluster that is at fault.
After an upgrade to git-annex 8.20210223 a previousl…
adswa updated
3 years ago
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With GCP support in Dask Cloud Provider (see https://github.com/related-sciences/ukb-gwas-pipeline-nealelab/issues/19), next we need to determine how to modify the worker images to contain necessary d…
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The concept_id for type concept EHR is not in the vocab.concepts table in UKB database.
https://athena.ohdsi.org/search-terms/terms/32817
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Hello, I'm running into the error below when trying to run the function.createUKBphenome.r script. It seems to be caused by line 24 in the function.collectFields.r script. Any advice how to fix this? …