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This proposes a minor API addition improving readability a tiny bit. I follow the wording in the template therefore I speak about a `problem`. Not having this API is not a problem in my opinion howeve…
dvdsk updated
9 months ago
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Update README to link to each of the raw callers used by GATK-SV: Manta, Wham, MELT (already linked), cn.MOPS, and GATK-gCNV. Refer to this article for the links: https://gatk.broadinstitute.org/hc/en…
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Hi!
I`m running SomaticSeq
makeSomaticScripts.py single --bam /scratch/bams/a.bam --genome-reference /scratch/references/GRCh38_full_analysis_set_plus_decoy_hla.fa --output-directory /scratch/som…
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**What would you like to be added**:
More reusable primitives when syft is used as a library. This would be able to do at least the following tasks:
- get source objects from descriptions + confi…
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Hi,
After running `anvi-run-scg-taxonomy` I'm getting the following error for each of my contigs databases:
```
Config Error: Bad news, Houston :/ The contigs database '/anvio/contigs_db_kegg/a…
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### What type of defect/bug is this?
Unexpected behaviour (obvious or verified by project member)
### How can the issue be reproduced?
Setup is freeradius 3.2 git 66e6389789c19d0b2 listening on udp…
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Hi,
Thanks for your work on this program. The method seems really elegant and we've had some really exciting results from it so far.
Here is a brief outline of our preliminary analysis:
- We…
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Looking through the code, it appears the default contigs for exclusion are based on hs37d5. Could this exclude list be expanded to include the appropriate GRCh38 contigs?
Also why is the mitochondr…
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- [x] Proposal added: https://github.com/dotnet/csharplang/blob/main/proposals/csharp-10.0/parameterless-struct-constructors.md
- [x] Discussed in LDM
- [x] Decision in LDM
- [x] Finalized: Done
-…
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Hello Dr. Maria Nattestad,
I am a PhD student researching Mycobacterium tuberculosis genomes with long read sequencing. Assemblytics is one of the variant callers we are using to study structural …