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MariaNattestad
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Assemblytics
Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
http://assemblytics.com
MIT License
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Web browser not working
#62
winkle38
opened
2 months ago
0
The case where the sequence strand of SV is a reverse strand
#61
jwli-code
closed
3 months ago
6
delta files problem
#60
Gon1976
closed
3 months ago
3
Fix log file permissions to run pipeline in background
#59
MariaNattestad
closed
5 months ago
0
Track examples in git repo
#58
MariaNattestad
closed
5 months ago
0
Difference between the 'within_alignment' and the 'between_alignment' methods
#57
LeoVincenzi
opened
7 months ago
3
Error Running Assemblytics_within_alignment.py
#56
jiaanqiang
closed
5 months ago
2
What are ref gap size , query gap size and ref_start and ref_stop for tandem expansion and tandem contractions?
#55
mariaelf97
closed
5 months ago
1
Repeat Contractions and Expansions are the most frequent call in a bacterial genome
#54
derekcg
closed
1 year ago
1
Stuck on "Checking progress"
#53
bmansfeld
closed
5 months ago
1
Why some "insertion"s reported by assemblytics have length of zero?
#52
mariaelf97
closed
1 year ago
4
add judgement about strand;fix query coord
#51
wjwei-handsome
opened
1 year ago
0
Coordinates in the negative strand are not correct
#50
wjwei-handsome
closed
5 months ago
1
No file uploaded
#49
weilu1998
closed
5 months ago
15
I upload a delta file, I get the error message "No file uploaded."
#48
ITGMT
closed
5 months ago
1
Confirmation parameters of nucmer
#47
qingyun-mei
closed
5 months ago
0
Update Assemblytics_dotplot.R
#46
thdurand4
opened
2 years ago
0
Tandem contraction
#45
rillaxy
opened
2 years ago
0
Issue with coordinates of variants
#44
MartuGio
closed
5 months ago
1
Server not available
#43
anleopa
closed
5 months ago
2
Bed file coordinate system
#42
agolicz
opened
2 years ago
2
Variants with the same coordinates
#41
kyleLesack
closed
3 years ago
2
R and Python versions
#40
shabirmoosa
closed
5 months ago
1
Assemblytics for bacterial genome
#39
rthapa1
closed
5 months ago
1
Can I detect the Inversion?
#38
shehongbing
closed
3 years ago
1
Failed file upload - Is the Assemblytics server down?
#37
Neato-Nick
closed
5 months ago
12
What does diagonal red lines/dots mean in interactive plot?
#36
MehmetGoktay
closed
4 years ago
1
Output bed file has no chromosomes in the first column
#35
lxxiaoxiaLi
closed
4 years ago
3
Identification of tandem duplications
#34
MehmetGoktay
closed
4 years ago
1
Unauthenticated File upload Vulnerability
#33
ghost
closed
4 years ago
1
Some lines without reference information in the bed file
#32
ShuaishuaiTai
closed
4 years ago
0
'Potentially' the same variant called as a deletion and an tandem expansion
#31
AyushSaxena
closed
4 years ago
1
Understanding output bed file
#30
ViriatoII
closed
4 years ago
5
Assembly statistics mismatch
#29
cssulliv
closed
4 years ago
3
Which tool was used to identify repeats and tandem repeats in the genome?
#28
AyushSaxena
closed
4 years ago
3
Maximum variant size
#27
MehmetGoktay
closed
4 years ago
4
Python 3 fixes
#26
MariaNattestad
closed
4 years ago
0
`TypeError: list indices must be integers or slices, not float` with uncompressed delta file
#25
0xaf1f
closed
4 years ago
2
UnicodeDecodeError when using compressed delta file
#24
0xaf1f
closed
4 years ago
4
UnicodeDecodeError when using compressed delta file
#23
0xaf1f
closed
4 years ago
1
Consolidate web version, update to python3
#22
MariaNattestad
closed
4 years ago
0
differences between the web and CLI version of the engine
#21
0xaf1f
closed
4 years ago
3
assemblytics uses python 2
#20
0xaf1f
closed
4 years ago
2
script for modifying a genome with known SVs
#19
liufy11
closed
5 years ago
1
Assemblytics within-alignments SVs
#18
GaoLei-bio
closed
5 years ago
6
Any tools to convert Assemblytics bed output to vcf format?
#17
JunpengShi
closed
5 years ago
7
Regarding the parameters in Assemblytics.
#16
koushik1989
closed
5 years ago
1
Does it have to be a delta file
#15
peflanag
closed
5 years ago
3
Output variant sequences
#14
CWYuan08
closed
5 years ago
1
input assembly stats from assemblytics
#13
chunlinxiao
closed
5 years ago
1
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