-
in the artifact_metrics.py script we create two reports:
1. a graphical report table and
2. a csv summary
These are both written to a folder defined by the --output-report-dir argument. The …
-
Hi,
In the new v2 pipeline, there is no option to turn off tertiary analysis. Does the pipeline still output the primary VCF calls *before* tertiary analysis is performed? Since we want the raw vcf f…
-
**DISCLAIMER**: This post is *not* meant to raise unduly criticism and / or fuel anxiety about the project. It is meant as a way to kickstart discussion for those who are interested in improving it.
…
-
In addition to migrating the remaining tool input and output args, there are few miscellaneous packages, tools and utilities that need additional work:
- [x] Rename `GATKPathSpecifier` to `GATKPath`
…
-
As discussed in https://github.com/broadinstitute/cromwell/issues/6235, developers of workflows for GCP who store their images in Google Container Repositories can be exposed to large Google GCS egres…
-
During a recent run we encountered the following errors:
From the cromwell log:
```
Sep 28 16:19:38 obi-immuno-pici-4 java[14038]: 2024-09-28 16:19:38,975 cromwell-system-akka.dispatchers.engine-…
-
Hello
i try to run cactus-preprocess with cromwell server ,the commad in the script file:
``` shell
cactus-preprocess ./jobstore --inPaths /sfs/cactus_prepared/762d515d-2872-435d-bf9b-fc9e1f0773b4…
-
One of the more obvious technical rules (even the low hanging fruit has to be grabbed! 🍌 )
Services like:
* Github
* Gitlab
* Bitbucket
* [OSF](https://osf.io/)
provide a nice framework th…
-
hi,
thank you for this great analysis tool
the only issue is it doesn't recognize new lc0 networks ( tried more than 10 no luck)
Could you please fix this issue
-
I am struggling to make read_json work on any data that is more complex than a flat json-map.
For instance, a json like
```json
[{"series":"GSE69360","name":"Biochain_Adult_Liver","path":"https:/…