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Hello,
First of all thank you for sharing your work!
I tried to install and use colabfold locally, and use colabfold_search instead of the server (I have ~7000 proteins to predict). I managed to…
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I've been trying to set up Openfold to test it out this week. It's been somewhat of a struggle but I am sooo close right now.
Everything is installed and no errors along the way.
But now this, .…
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Hi, I've been running the MMseq2 ColabFold for a specific type of protein sequences, and I always get the same set of ~4000 sequences in the .a3m file. Would it be possible to put these sequences from…
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## Expected Behavior
Rather than outputting the MSA files I get a segmentation fault.
## Current Behavior
I get a segmentation fault when I add the `--allow-deletion` flag. Works when I don't use…
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hi, i ran into a similar issue as https://github.com/soedinglab/hh-suite/issues/337 and https://github.com/google-deepmind/alphafold/issues/661. i have also tried -db_preset (as suggested in #661) but…
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why is this in draft mode but listed as migrated?
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:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki).
## Expected Behavior
addss.pl should generate files that contain
> >ss_pred, >ss_conf, and >ss_ds…
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I am starting a new project based on A3M today. Which version should I use? the master branch (2.x) or the ci3-beta branch? Will the 2.x be deprecated in near future? There is also a forked A3M (https…
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I have two profiles within the pfam database: PF00336.20 and PF17919.3. Querying the database using **hhsearch** with PF00336 hmm as a query I got mapping to PF17919:
`ffindex_get pfam_hhm.ffdata pfa…