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Hi @tseemann,
I have abricate `v0.9.9` installed using `brew install abricate`, but somehow megares is not displayed in the `--list`. Should the `megares` database come with installation of abricat…
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Hello everyone,
I'm using the tutorial mentioned here and https://bactopia.github.io/v2.2.0/tutorial/ and facing the following error:
`Species 'Staphylococcus aureus' not available, please check…
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I will collect the ToDos from this thread here @GwennyGit maybe you can mark what you did already and on what branch :D
- [x] remove CGXII and replace by CGXlab but rename to CGXII
- [x] remove LB an…
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**Description**
Thank you very much for providing Bactopia. After upgrading to bactopia 2.2.0, `bactopia datasets` errors out on AMRFinder+ DB installation. A patch to correct the glitch is provided …
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Issue description:
I'm running Bactopia to analyze some bacterial genomes and encountered an issue while setting up the AMRFinder+ database. I've installed AMRFinder+ version 3.10.45 and curl versi…
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I was trying to go through "Quick Start ". "mamba activate bactopia" command worked fine, but running "bactopia datasets" generated the following error message: what I should do?
2023-05-19 09:29:…
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Hi,
Good day!
I am trying to setup bactopia to our ubuntu server but error show upon using the command "bactopia datasets" please see error below.
(bactopia) cvo@arsl_server:~$ bactopia datas…
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### E-mail
kritikaverma2707@gmail.com
### Full Name
Kritika Verma
### URL perfil Linkedin
https://www.linkedin.com/in/kritika-verma-0b5394229/
### Bio
I am a highly motivated undergraduate stu…
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### Week 1 - Get to know the community
- [X] Join the communication channels
- [X] Open a GitHub issue (this one!)
- [x] Install the Ersilia Model Hub and test the simplest model
- [x] Write a motiva…
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Hello there, I am Koke. The first thing i want to say is thank you for such an incredible job! Secondly, I have completed a bactopia standard analysis and my results are stored in the output path `OUT…