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Hello all,
I tried to run the example but it was failed (problem is attached).
Would you please advise me on how to proceed ?
Amir
```
amir@amir-VirtualBox:~/FAST-iCLIP$ fasticlip -i '/home/…
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bionorm index-gff --compress Aeschynomene_evenia/CIAT22838.gnm1.ann0.ZM3R/aesev.CIAT22838.gnm1.ann0.ZM3R.gene_models_main.gff3
File "/home/localhost/adf/.local/pipx/venvs/bionorm/lib/python3.8/si…
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I'm getting several errors in the mpileup section of the assignment, and I'm not sure if they're related or not. The first is: [flush_bcf_records] Error: failed to write the record to standard output
…
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Hi I'm getting the following error compiling:
make[1]: Entering directory '/mnt/mfs/cluster/bin/Raremetal2/libStatGen/samtools'
ar -cru ../libStatGen.a obj/bgzf.o obj/knetfile.o
ar: `u' modifier …
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I used bs3-call_methylation with alignment from test data, but got error message as follow,
BS-Seeker3 beta
[bam_sort] Use -T PREFIX / -o FILE to specify temporary and final output files
U…
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Building popscle with gcc 9.4. It fails with the following messages:
In file included from /home/dodgec/xiss-64708/popscle-0.1-beta/hts_utils.h:42:0,
from /home/dodgec/xiss-64708…
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So turns out htslib can be built for [windows](https://github.com/samtools/htslib/issues/907).
I attempted to build dhtslib on windows and got errors for the following:
```
..\..\AppData\Local\dub\…
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i have .fa, .gtf, .bam, barcodes.tsv files. And i have run the` briekit-event ` and `briekit-event-filter` to gain the SE.filter.gtf.
now i run the brie-count, i can't unterstand the errors, would yo…
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Hello. Thanks for the great tool.
However, the tool seems to fail to parse structs with bit fields.
Please provide support for bit fields.
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Samtools build:
Version: 1.9-170-ge5bac55 (using htslib 1.9-362-g9d2163a)
Environment:
Ubuntu 16.04, x86_64, gcc (Ubuntu 5.4.0-6ubuntu1~16.04.11) 5.4.0 20160609
When I try to view region `'*'`…