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Hello! Thank you for creating this tool - just what I was looking for :) I've been following the CellRank basics tutorial and have issues computing the terminal states for one of the conditions…
shaln updated
2 years ago
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I selected some cells in the demo `cortex development` dataset and tried `edit|export selected` but nothing happens after then. Is there supposed to be a pop-up dialog to save the selected cells' UMI?
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This would be really useful and would be pretty straightforward to implement for ucsc cellbrowser and cellxgene.
For ucsc the meta data and matrix are stored as compressed files that can be downlo…
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HI
I used cellbrowser v0.7.1 in a HPC environment to create the files required to host it on our website.
The issue here is that a warning message pops:
![image](https://user-images.githubuserc…
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Is this possible? It's essentially making cell selections based on annotation set operations.
I want to select a set of cells within cluster A as background (param == 'X', cluster=='A'),
and com…
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Visualising one of our Single Cell Expression Atlas AnnData's works very nicely with the multiple tSNEs and UMAPs that we are embedding currently, but the layout drop down could be wider on need if th…
pcm32 updated
3 years ago
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Hi,
Thanks a lot for developing this awesome tool. Here's my inquiry:
I use scanpy and I have a h5ad file, I use `cbImportScanpy` and `cbBuild` to build necessary files for the webpages. I can s…
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I'm using Python 3.7.5, ome-types 0.2.1, and on Windows, trying to pass my xml string in to from_xml:
File "d:\src\aics\cellbrowser-tools\cellbrowser_tools\fov_processing.py", line 295, in add_se…
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Hello,
I have used CellSelector successfully in the past (Seurat v2 and possible v3 ), but in recent months ( v3, v4), I'm unable to get it to capture the cells I'm selecting with the mouse. Not s…
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Hey!
I've recently had UTF-8 character in metadata (en-dash instead of minus sign), and cellbrowser didn't handle it well.
When this part of metadata was loaded on cell hover, there were alerts, a…