-
### Description of feature
**Description**:
I am writing to request the addition of parameters for specifying haploid contigs and regions when detecting SNPs and Indels using DeepVariant in the nf…
-
v2.1.8:
```
diamond blastx -q GCF_000708165.1_E_coli_EC2.contigs_genomic.fna -d a.fasta --range-culling -F15 --outfmt 6 qseqid sseqid sstart send scovhsp
NZ_JFJL01000045.1 WP_000046661.1 1 109 100
…
-
When 2 contigs overlap and the ratio of that matching region is < 10% Ray won't merge those 2 contigs.
Exemple :
```
Overlap=9142/9142 (100%)
```
-----------…
-
Hi thanks for the great tool.
I am trying to calculate ANI between multi-contigs bins, where each viral bin consists of multiple contigs.
However, length estimate is different from the original one,…
-
Hello,
I keep getting the _KeyError: 'processed_path'_ message when attempting to upload a PDB and specify a motif/hotspots during receptor preprocessing. I assume it is a mistake on my end with the …
-
I'm providing the paired reads buts not recognizing my reads. Even when I interleave the reads and explicitly set `--interleaved` it doesn't work.
There's no error messages.
Do you have any i…
-
Hi，
Thank you for the useful program. I am running this program with the test data. Every steps was successful except circularization. I got the error message.
2023-12-05 17:20:41 [INFO] Welcome t…
-
Error message I received:
$ aws s3 cp s3://logan-pub/c/SRR18385003/SRR18385003.contigs.fa.zst . --no-sign-request
fatal error: An error occurred (404) when calling the HeadObject operation: Key "c…
-
I have been trying to run ```g2gtools patch``` and ```g2gtools transform``` but encounter errors like:
`[g2gtools] Error: invalid literal for int() with base 10: '02N'`
`[g2gtools] Error: invalid …
-
1. I tested my own dataset and the program assigned a genus even for bacterial contigs (RNA model). It would be great if there was an entropy setting to skip false positives. For example less than 0.5…