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It seems like install_data.py -- in particular https://github.com/davek44/Basset/blob/6ae86b88a8df8607c58590ee84a3702662ac33dc/install_data.py#L113 and https://github.com/davek44/Basset/blob/master/sr…
ptn24 updated
4 years ago
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I think that the `d_model` parameter (the embedding dimension) would take a significantly larger value than the value currently used. It is usually a multiple of num_heads, which usually take the valu…
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I have identified discrepancies between the sequences extracted from the `hg38.ml.fa` reference genome using BED file coordinates and those stored in the tfrecords within the Basenji dataset hosted on…
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I have 77 vcfs, of which 73 are successfully converted to maf using vcf2maf.pl.
The remaining 4 files reported `ERROR:Failed to run the VEP annotator`
Here is the log of one example.
`STATUS: Run…
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## ❓ Questions and Help
I have pretrained roberta-base on dna promoter sequences of plants (working on a project). I am currently trying to finetune it on a downstream task of predicting gene express…
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I'm getting some index out of range errors, possibly because of setting the same value (or too close?) for `-min` and `-max`:
`-min 10000 -max 10000`:
```
2022-04-21 13:17:35: Start simulation of…
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**Supervisor:** Bérénice Batut
**For degree:** Master
**Status:** In progress
**Keywords:** Python
# Global context
Over the last years public media is reporting more and more about scientifi…
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Hi Dr. Girgis,
Thanks for this interesting package and I'm really excited about it. I installed Meshclust and could run some of the example data to completion easily (keratin_query.fasta). Unfortu…
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## Environment
- OS: Databricks runtime 15.3ML with mosaicml streaming 0.8.1.
- Hardware (GPU, or instance type): g4dn.12xlarge
## To reproduce
Steps to reproduce the behavior:
```…
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Could you provide a script/notebook demo to show how to finetune this model?