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I was testing this catalog with ExpansionHunter and came across the following error message:
```
2024-09-06T16:55:43,[Initializing reference /pl/active/dashnowlab/data/ref-genomes/human_GRCh38_no_…
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#### Description
We are currently using chewBBACA for genomic surveillance, and one of our workflows involves running the `JoinProfiles` function to add new samples to the results of historic sampl…
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Hi,
I'm trying to create a database before running a cluster analysis, however I'm getting a "Fasta entry 0 is invalid" error.
I have tried creating databases in another fasta files and there's n…
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When I zip the Homo_sapiens.GRCh38.dna.primary_assembly.fa to .gz file and add this link in the download.sh, it will show the error: gzip: stdin: not in gzip format.
If I use .fa file directly, …
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Dear Feng Chao:
here is my log file first of all:
[log_20240909.txt](https://github.com/user-attachments/files/16927494/log_20240909.txt)
I used modified workflow DIA_SpecLib_Quant to do protei…
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Hello,
When I try to run cobra, I just get error message like this
```
(cobra) wk@t:~/res/20240905_cobra$ cobra-meta -f /home/wk/res/test/SPAdes/contigs.fasta -q /home/wk/res/20240905_cobra/metaSp…
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Line 105: usage();
should be followed by "exit();"
Otherwise, compilation fails on Ubuntu 18.04 with message:
fasta_formatter.cpp:105:9: error: this statement may fall through [-Werror=imp…
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Hi,
After scaffolding, I followed the recommendation, executed the juicebox.sh, and used the out_JBAT.hic and out_JBAT.assembly to obtain a modified assembly in juicebox.
However, when I ran the jui…
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cutadapt 4.9
I have 16S amplicon reads that were sequenced with ONT that I am trying to demultiplex. Each sample was PCR barcoded with a 13 base barcode on both ends, so I expect a read to start wi…
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Hi,
as the google group does not work for me (it states I have no access) and the contact group admin does also not work, I try it here.
I'm trying to do a crosslink search of TMT labelled sampl…