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I am performing a GO enrichment analysis using genes from the transcriptome as the reference universe, consisting of 23,761 genes. I then conducted an enrichGO analysis on my differentially expressed …
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hello
i used stereo seq to analysis sp, want to ask how to create score for focus cell type ,i look for u example nk_cells is
AAACAGTGTTCCTGGG-1_-0 0.061412
AAACCGGGTAGGTACC-1_-0 0.3088…
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Hi,
I have been using IRFinder for a while now and it has been very usefull for the detection of intron retention events in our sequencing data. But recently we were looking at BAM file in IGV and …
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Can we have a metric on the website about the number of genes in GO-CAM models (by species)
i.e. a non-redundant list of genes that are causally connected (obviously, some genes will be in mul…
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Hi, thanks for this impressive work on this project!
I have a question regarding the use of the Gigapath model to generate embeddings for the task of TCGA LUAD 5 genes mutation prediction. I notic…
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## Please use the template below to post a question to https://discourse.scverse.org/c/ecosytem/cell2location/.
### Problem
the use_gpu parameters cannot be used in NB regression model traini…
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When I originally started developing chanjo2 I kind of copied the behavior of chanjo -> Include in stats onlt transcripts associated with mRNA. For instance the POT gene has several transcripts:
…
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I want to open a discussion about **which annotation tags we should add to genes** that might be helpful in the future.
We should decide soon as many will start annotating genes from this day on. :)
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Hello, referencing #2855, I have an integrated Seurat object ("so"). I want to add additional genes to the object after integration (I don't want the additional genes to be considered when integrating…
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Hi,
I am running version 4.1 in command line and I am getting all the output, except for top_genes. Do you know if there is something I can do to obtain it??
[cnmf.txt](https://github.com/dylkot/…