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### Description of the bug
Hello,
I'm getting the error from the title when testing the pipeline, starting from BAM files produced by nf-core/rnaseq. Tested with the latest dev version and Nextflo…
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We are seeing an increasing number of the following exception. This is actually reported by the Wave client in Nextflow, but I was wondering if it could be related by some kind of failure on the backe…
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```
[mynewuser1@38dc85a1ff5b ~]$ wget -qO- https://get.nextflow.io | bash
/home/mynewuser1/nextflow: line 309: which: command not found
CAPSULE: Downloading dependency org.slf4j:log4j-over-slf4j:po…
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## Bug report
When running nf-core/sarek on AWS via Tower (with Wave and Fusion enabled), the error `Wave does not support 'null' container engine` occurred while executing process.
### Expect…
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## Check Documentation
I have checked the following places for your error:
- [yes ] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [ yes] [nf-core/circrna pipe…
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## Bug report
On two of my pipelines running on EKS/wave/fusion I keep getting a ` HTTP/1.1 header parser received no bytes` error that kills the pipeline at different stages of the workflows (non…
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### Description of the bug
I’m getting this error and I’m wondering how to solve it. I’m using the genome mm39 (which is new and not in igenome) so I’m trying to provide custom genome to the pipeline…
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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
v0.4.0-g70714be
### Workflow Execution
Command line
### EPI2ME Version
_No response_
…
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### Description of the bug
Hello,
I just ran one of my test samples that works on v1.2.2, but not on v2 of the pipeline.
The pipeline works perfectly but after MACS step it throws an error :…
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### Description of the bug
fail to run test data
### Command used and terminal output
```console
$ nextflow run nf-core/sarek -profile test,docker --outdir .
```
### Relevant files
java.nio.file…