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I could not run plmDCA with the latest docker environments. It kept crashing. I tried to resolve the issue, but I could not.
Following is the error message.
`[2019-11-12 15:06:28.109831] potts ru…
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Hi,
We have installed Agnostos-wf and in our first attempt to analyze our metagenomic data we got the error bellow (in bold) after running 'db_creation' workflow
Used command line:
_snakem…
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Dear hh-suite developers,
Thanks for creating such a wonderful tool.
We are trying to align 750,000 proteins sequences using hhblits on a compute cluster. However, we are having the storage random…
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I installed hh-suite in linux x86_64 and have been successfully using the HHblits function.
I use uniclust30_2018_08 to generate the multiple sequence alignment file .a3m.
Then use .a3m file to se…
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Run " run_pyrosetta_ver.sh example/input.fa . ",
Running HHblits
Running PSIPRED
Running hhsearch
Predicting distance and orientations
Running parallel RosettaTR.py
Running DeepAccNet-msa
Pi…
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### Status of the documentation web page
- Need to rebalance between "Seamless explained" and feature documentation for several features. The former should be more conceptual, the latter more practic…
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:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki).
hi !
i am trying to build a customized databases, using the workflow that recorded in "user guide"
…
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Hi, I am trying to troubleshoot performance of hhblits on cluster and supercomputer resources at the ORNL OLCF. We are finding that the newest version is running really slowly despite moving databases…
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I'm trying to test RF2NA on a restriction enzyme (PDBID 3e42) however whenever I run the MSA generation step I got an error message:
22:32:35.465 ERROR: could not open file '/RF2NA/bfd/bfd_metaclu…
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Hello everyone,
I am having a difficult time using RoseTTAfold as I am inexperienced with using HPC and more complex installation procedures. I am running into a few problems while running the soft…