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Hello Dr Ryan Wick,
Amazing software, very easy to use! I have a question, I used Unicycler on HPC and submitted a job requiring 64 cores - I requested 70. The HPC in my campus uses an LSF scheduler …
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Updates failed website-build a month ago but schedule looks correct.
- incorrect lat/long mean OpenStreetMap or Google Maps will direct learners to the RVI
- Missing link to collab document
- Sam…
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| by saw562@nci.org.au
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How can we monitor usage of the HPC using the ACCESS system?
Things we might want to collect:
- Who is using the system? (CoE, BoM, CSIRO)
- What are people run…
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Need to have a script that will tell us if we missed any steps for species which should successfully complete the workflow. Need to:
- [x] Establish criteria for which species should complete the w…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### New feature
- Somewhat related to #227
- Add a flag to `nipoppy run` (and `nipoppy bidsify`) which will make …
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Hi,
I am a new user of the Unified Forecast System (UFS), focusing on the Hurricane Analysis and Forecast System (HAFS). I am working on the NCAR HPC system, Derecho, where UFS installation is supp…
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This is an example `.slurm` script I use for my job array. Assuming that I have a list of hundreds of command lines that can be run in parallel (i.e., they're independent of each others). All command …
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Hi,
I am remote connecting HPC, when I login, there is no browser support. How can I login? Thank you!
Best,
Yang
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Hi,
When I try following command I get this issue. I googled and some suggested to downgrade Simple ITK. but it did not work
`CUDA_VISIBLE_DEVICES=0 nnUNetv2_plan_and_preprocess -d 128 --verify_d…
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Proposal:
- At the end of every data segment, save the training checkpoint file/directory name to a file, informing the scheduler (e.g., slurm or lsf) where to find the checkpoint.
- Save the model …