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I am using Seurat v4.4.0 and I was attempting to load pbmcref data. At beginning, I faced an error during loading the data
`InstallData('pbmcref.SeuratData')`
this was solved by following [#15 ](url…
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Comparing prod and prod2 as part of #3782, @achave11 found some insignificant differences in the `/index/project` and `/index/summary` endpoint responses for otherwise identical catalogs. I think it …
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**Context:**
Following the general HCA meetings in June 2022 (see [here](https://docs.google.com/presentation/d/1ELPE_pEAHxmrbiE9uS8DCkHmV8naChxIqbuTOKSMcFg/edit)) we decided to work directly with the…
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Hello, I currently have scATAC data with approximately 3.43 million cells and around 160,000 peaks. When I attempt LSI dimensionality reduction using all peaks, it takes an incredibly long time (seemi…
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Hello,
Thanks again for such a great tool!
I'm currently trying to use Cell BLAST to integrate some pretty diverse datasets; several mouse scRNAseq atlases, a zebrafish dataset, and fly dataset…
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Do something similar as in the article [Adventures in semantic publishing: exemplar semantic enhancements of a research article ](https://www.wikidata.org/wiki/Q21092566) (2009) where they semanticall…
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Hi,
I would like to work with the recently published adult human brain atlas which contains 3M cells https://www.biorxiv.org/content/10.1101/2022.10.12.511898v1.full .
When I connect to the lo…
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**Describe the bug**
When trying to use the populate_ingest script in hca-ebi-dev-team an environment needs to be created using the libraries specified in the requirements.txt file. When venv tries t…
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https://docs.google.com/document/d/1xpzQUAJVzwGjWenLlLYrgYyinTaHRZJy_77sWdLR0AY/edit#bookmark=id.1uqyyc2pm4bd - basic example is good. Just needs updating.
- [ ] #13
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### TASK
Currently, the build downloads are via the `builds/data_to_download.txt`, which is a list of URLs. While this will work for 90% of the existing data used, there are a few data provides tha…