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As described in https://github.com/monarch-initiative/monarch-app/issues/887#issuecomment-2479676335, there is an HTML injection bug in the phenogrid component. The offending code is here:
https://…
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Issue Documentation is http://handbook.arctosdb.org/how_to/How-to-Use-Issues-in-Arctos.html
**Is your feature request related to a problem? Please describe.**
_A clear and concise description of w…
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**Goal**
Describe media contents using the parts code table. We hope that this could lead to searches for parts that not only return records that include those parts, but also media that includes tho…
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Hello,
Thank you for the tool. Finally, there is a way to start from SNVs, CNAs and purity and perform QC and check for clonality!
I tried to run `analyze_peaks` command by changing the `min_abs…
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Hello, Thanks for creating this package.
In your paper, you have "Fig. 4: Copy number alterations in a primary patient sample." where Figure 4c is "Correspondence between karyotype clones from (a)…
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I am working on assembling an autohexaploid plant genome with a genome size of ~2.7 Gb by flow cytometry. In addition, the one published closely related species has 2n=6X=90 karyotype, 440 Mb haploid …
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Hi, thank you for great tools.
I found two bugs, so please fix them.
1. An error occurs when `supported_peaks = c(“1:0”, “1:1”, “2:0”, “2:1”, “2:2”)` is not present in the karyotype of subclonal C…
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When I tried to plot **Macrosynteny visualization** with the command `python -m jcvi.graphics.karyotype seqids layout`，it reported that to me "ERROR Size of `scaffold_*` is empty. Please check" wit…
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Hi, Professor,
I found that the ancestors of each node have more than 1,000 CARs. After further processing the results as the input file of ANGES, the result is that the ancestors of each node still …
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Dear Justin,
Thanks for this amazing, super useful and straightforward tool.
I ran an analysis on two mammal genomes (both are 24 almost identical chromosomes) using the following parameters: …