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```
Copied to the issues list, so we don't lose track - see detail below.
I agree this is not ideal, although I don't know if using a zero code is more
useful than just leaving the attribute out. I …
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```
Hi all, thank you for this great lib. I have located (and coded a solution for)
the following bugs in Tandem2mzid (v1.6.10) when reporting in the output mzid
the fragment ions from a X!Tandem in…
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Hi,
It seems you can only define fixed modifications with calculateFragments().
Am I right? If not, how to do it?
I think a feature like this could be useful.
Posible ways of implementing this are:
1)…
adder updated
5 years ago
-
Hi, I have a peptidomics run with a DB with pre-digested peptides, including those with one missed cleavage. I have recently discovered `-ignoreMetCleavage 1 -enzyme 9`, which I have started using. Af…
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```
At PSI 2013 some preliminary work was done on supporting crosslinking in
mzIdentML. A sketch of one possible solution is as follows:
RVDKSGLHCPLLPDDR
NGVTL…
-
Hello,
I ran SearchGui search using ThermoRaw converter and MS-GF+. When some files are processed, the loading in PeptideShaker is aborted with following error (from log):
`Wed Feb 09 12:31:03 CET…
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Hello
I am trying to run ms2rescore but get the following error :
```
Reading PSMs from file...
Reading PSMs from PSM file (1/1): `C:/Users/ofm83/OneDrive/Documents/Megaphobema_perterklaasi/o…
-
```
At PSI 2013 some preliminary work was done on supporting crosslinking in
mzIdentML. A sketch of one possible solution is as follows:
RVDKSGLHCPLLPDDR
NGVTL…
-
* data formats: accessibility and challenges
* the open Vs. closed source scenario
* common programming languages: founder's effect and influences from the software development field.
* how new stu…
prvst updated
5 years ago
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Is it necessary to filter out the results based on the peptide matching score after performing the estimation of FDRs?
For example, would you avoid reporting a PPI based on a small matching score v…