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This is the result of discussions on the two (now closed) issues:
rna-transcription -- weird non-biological thing slipped into this problem #148
and
RNA Transcription: source gives slightly differ…
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This is a marker for the issues we discussed on the AIRR-SW-WG call today.
Some characteristics of real-world data sets:
- Many data sets do not cover the entire V-region. It's quite common today…
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Found investigating #143. `pxaa2cdn` won't work if nucleotide sequence lengths are not a multiple of 3 (codons). However, `pxtlate` will translate as much as it can, and just disregard any "extra" nuc…
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### The Problem
Using the Pairwise alignment in BioFSharp.Algorithms works fine but the only implemented way to write out this alignment in a correct format is in the BioFSharp.IO.Clustal module. A…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…
veghp updated
2 weeks ago
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[This error][0] in `rust-mdbg` is triggered because lowercase bases are passed to `nthash`. Possible solutions:
1) users of the crate need to provide uppercase (non-repeat masked) nucleotides. This w…
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Dear Torsten,
we use snippy in order to align the reads to a reference and to obtain the annotation of the variants. Unfortunately in the results that we obtain we loose some SNPs because of the co…
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the consequence of a specific intronic variant is the insertion on RNA levele of 29 nucleotides. Since I wanted to check the predicted consequences at protein level but Mutalyzer does not support r. v…
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Hello,
I am interested in generating a track that summarizes (using color code) the number of nucleotides aligning at each position. In essence it would be identical to the track that is automaticall…
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# About
I have uploaded two scripts to my git repo containing my solutions for modifying the ```tableofSNPs.csv``` to perform data cleaning (task) and permute nucleotides (extra task). I have also …