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Any fix for this? running:
`build-tools/downloadPangenomeTools`
```
c++ --version
c++ (GCC) 10.2.0
```
```
c++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
…
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At 70 genomes and 109GB of graph data
```
-rwxr----- 1 kevin kevin 109G Jun 26 08:10 pangenome.lemongraph
-rwxr----- 1 kevin kevin 8.0K Jun 26 08:42 pangenome.lemongraph-lock
```
Not sure why, …
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Hi
I thought I better create a new issue.
I'm getting time out errors on all my requests from displaying all paths in my graph (to display paths in the paths drop-down menu) to running vg chunk.…
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I want to generate a VCF file from haplotype-resolved assemblies using pangenome-graph-from-assemblies, recommended in document, but encounter error. Is it a format problem of config.json ? The pictur…
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Hi, When I want to build a 30 species pangenome database for snp calling, I meet some errors. fna and other files were downloaded from PATRIC database. I found that some of strain's fna files failed …
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Hi,
I am running the mc pangenome pipeline on SLURM. Among the `minigraph_map_one` jobs, a few of them have error like `FileNotFoundError: [Errno 2] No such file or directory: tmp/......./deferred`…
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Hello rpvg team:
I've successfully gotten the .gamp file of the transcriptome file with vg mpmap and there was no problem at all. But when I run rpvg, I have this error:
Running rpvg (commit: cd51…
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Hi,
My name is Maggs. We recently generated a pangenome graph. We used soft-masked genomes as input. Since then, we revised the masking. The regions that are soft masked differ rather substantiall…
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**1. What were you trying to do?**
I am trying to generate vg node IDs using the vg id command. I am using the .vg files generated by using vg construct in this [link](https://github.com/vgteam/v…
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Hello,
Thank you for designing this pipeline, which is really easy for non-experts to use. I have a small question. Is there an option to retrieve annotated genomes in gbk format?
Thank you for t…