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Stepping into code in the debugger. Consistently, when the debugger gets to Static.jl line 742 I get:
```
┌ Error: Some Julia code in the VS Code extension crashed
└ @ VSCodeDebugger c:\Users\elber…
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in order to exploit PT better, assigning different starting points to the different chains would be good, as discussed here: https://github.com/ICB-DCM/pyPESTO/pull/268
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Add model from https://www.nature.com/articles/s41540-019-0107-2
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In ``pypesto.objectiv.AmiciObjective.init_preequilibration_edata``:
Currently, len(fixed_parameters) == 0 is used as an
indicator of requiring no preequilibration. However, when there
are events …
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Depending on the order of the changes applied for a condition the model will be in a different state. I.e. the order of the columns matters in the condition table.
E.g. a model with species `S` in co…
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In the following line of code, the sample is checked to be within the parameter bounds used for optimization https://github.com/ICB-DCM/pyPESTO/blob/master/pypesto/sampling/metropolis.py#L59 this is h…
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I am trying to perform likelihood profiling for a problem from parameter fitting to data. Here, I know bounds for all parameters, and want to incorporate this both into `theta_bounds` and `scan_bounds…
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Parameter changes which affect compartment volumes must update the concentrations of the species in the compartments. This is currently not done in AMICI resulting in incorrect initial concentrations/…
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https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4012420/
SBML: https://www.ebi.ac.uk/biomodels/BIOMD0000000529#Overview
Estimated complexity of implementation: low