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Hello, I want to use padloc-2.0.0 with the fna option it works well but when I want to to use it with annotated proteins with the --faa and --gff options I have this issue ERROR >> 3 protein sequence …
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Hi,
Love this tool – annotating a large number of protein sequences currently, and it's awesome being able to see KO's, gene names, GO terms, etc, but is there any easy way to batch map the seed Eg…
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When using RefSeq merged cache for GRCh37, VEP returns outdated symbols of some genes, even though the same genes are reported with the updatd symbol in RefSeq GFF.
For instance, genes IKBKAP and D…
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Dear OrthoFinder,
Thanks for your such amazing work.
There are multiple protein sequences under each OG, how do I determine the final protein function of each OG. Two ideas, first, annotate all OG m…
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dears
there are some issues about the enrichm.
When I use enrichm to process my MAGs, it always reports the following error.
![image](https://github.com/user-attachments/assets/12392aef-7138-4433-…
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Hello!
I´ve been using Chromatiblock, and have managed to produce apparently correct visualizations. I´ve tried adding a protein list containing various aminoacid sequences for annotation using -g…
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* **PTHR ID & PTN node:**
GO:0003712 | transcription coregulator activity | IEA with PTHR10782:SF97 | GO_REF:0000118
GO:0006357 | regulation of transcription by RNA polymerase II | IEA with PT…
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**Is your feature request related to a problem? Please describe.**
Currently the entry for Variant Validator in Variant Info page is empty. We need to fix it in order to provide a possibility to acce…
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Re-visit the idea of annotating protein binding using the IDA evidence code and the annotation extension has_input wrt better aligning conventional and LEGO annotations.
Points to consider:
1. N…
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Subtask of #13754
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GO:0099614 protein targeting to spore cell wall
-> RENAME 'protein localization to spore cell wall'
-> 2 EXP annotations, consistent with that new label (ie whether the…