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Hello,
I have a Seurat v5 object. I subset it by the values of a column called 'family_label" and need to run `AverageExpression()` on each of them. It works on each of the subsets until I get to t…
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batch-benchmark fails all but the first test, debug-benchmark always succeeds and debug-result-parser always fails to produce a result. Not sure how to get further with debugging run when debug-benchm…
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### Is there an existing module for this?
- [X] I have searched for the existing module
### Is there an open PR for this?
- [X] I have searched for existing PRs
### Is there an open issue …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/christinehou11/humanHippocampus2024
Confirm the f…
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Hello,
How can I create the emission probability heatmap as shown in the ENCODE presentation?
https://wiki.uiowa.edu/download/attachments/101234675/Segway-UIowa-45-public.pdf?version=1&modifica…
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HI,
I was able to run [this tutorial](https://github.com/dpeerlab/SEACells/blob/main/notebooks/SEACell_computation.ipynb) on the provided sample data. However, I am running into problems when using…
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Hi, suggest to have RNA expression info on the variantpage.
made a draft table, pasted below.
feel free to contact me and discuss the matter
RNA expression
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We need to select a default reference species for all NCBIGene identifiers since there aren't ortholog group identifiers. This does result in the question as to what identifiers we should use for expr…
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Getting an error on the following step, any help would be appreciated!
```
[66/af4c33] process > GAP:PROCESS_SINGLETON_GENOMES:PROKKA (MGYG000000010) [ 42%] 3 of 7, failed: 1
```
Error:
```
…
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We are interested in exploring the potency of the [original hit RA-0010017-01](https://github.com/StructuralGenomicsConsortium/CNP7-RdRp-S1-Tetrazole/wiki/Origins-of-this-Project) analogues to study t…