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1. A comparison of automatic **cell identification** methods for single-cell RNA sequencing data
Article Link: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1795-z
2. Challen…
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Dear author,
It's amazing that RiboTaper has his github site.
I had been using RiboTaper for Ribo-seq analysis. But I had suffer a error and had no idea how to solve it.
**Error informatio…
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read_json almost never work for me. Here is for instance a json that is totally valid but breaks read_json
```
{
"id" : "GSM1698568",
"gse" : [
"GSE69360"
],
"title" : "Biochain_Adu…
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Hi Alex,
@alexdobin
I have an error of STAR for single-end mRNA RNA-seq.
(QuantSeq 3' mRNA-Seq Library Prep Kit FWD)
I found the code from the web https://www.lexogen.com/quantseq-data-analysis/…
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Hello, thanks for all your work on this fantastic package!
I encountered an issue downloading the Star - Counts for TARGET-NBL. It seems to be caused by more than one file per case in that cohort.
…
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Dear Shi,
if I have a paired end small RNA-Seq data, can I analysis it using SPORTS?
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Dear Yuqing,
Im working on a RNA-seq meta-analysis and trying to use ComBat-seq to normalize read counts previous to DESeq2 analysis. Im using the following command to normalize the counts within t…
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First of all thank you for this nice tool.
I run nebula for differential expression analysis between 2 groups and I realised that my top (by logFC) significant genes are mostly driven by some outlie…
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Hi @alexdobin
Thanks again for writing & maintaining STAR. The latest diploid mapping feature is very cool. I was wondering how difficult you think it would be to extend it even further, to map to …
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Hello,
Thank you for developing this nice tool.
I'm interested in analyzing allele-specific expression (ASE) in my single-cell RNA-sequencing (scRNA-seq) data. This data comes from offspring tissues…