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Hello,
I read your R script about single cell RNA-seq analysis workflow.But I can't find the code about diffusionmap and monocle trajectory analysis.I'm interested in it.Can you share it on github?
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- Introduction to RegTools functionality. After HISAT2 alignment, QoRTs (written in Scala) performs QC but also processes RNA-seq data to produce count files needed for splicing analysis by DEXSeq and…
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Hello
Could you inform me if the raw RNA seq data used in this analysis are publicly available for download somewhere?
Thanks,
Guillaume
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To expand the MC2 data model, data type-specific metadata models should be assembled and reviewed by the community via the Request for Comments process. One strategy for implementing is as follows:
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Hello,
I am trying to identify time-dependent genes using the time series RNA-seq data with only one sample per each time point (there are about 20 time points which are not equally spaced), and wo…
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This serves as a reminder of the Questions to be answered, @Rhopala will make a comprehensive description of the scenario later on. @gaow please correct me if I got the question wrong.
According to…
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## Progress Report of Bloodies
#### What has changed based on the final proposal
We are using the same datasets as proposed but has eliminated a few samples from the analysis. For example, we remov…
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@mandichen
Hi,mandichen
Good job and I am very interested in your research, but I have some questions.I used the sample data BM2_v0s0_n_200.h5ad and Macosko_cell_cycle_genes.txt to get the follow…
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# Design (@brianraymor)
## obs
...
### modality
Key
modality
Annotator
Curator MUST annotate.
Value
categorical wit…
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Thanks for sharing this exciting tool! I am applying decontPro to a TotalSeq experiment with 155 markers and 9 isotypes. In your paper Isotypes were removed before running decontPro() - is this absolu…