-
Hi,
Any idea what does this error mean?
`visiumHD_object
-
Hi,
May I ask you, Can GETA be used for annotation if RNA-seq data is not available？
Thank you
Huangchao
-
Hello there,
thank you for developing and maintaining a great pipeline!
I'm now testing a variant call option on an RNA-seq dataset. Although I have 3 replicates, for this testing I just use 1 of …
-
Added new columns and data to previous table in issue#445
| File Category | Old Data Filename | New Data Filename …
-
Hi,
I got the following error message from kallisto quant, but kallisto seems to be on version 0.50.0 and it doesn't explain what those versions refer to.
```
[quant] fragment length distributio…
-
Published: https://doi.org/10.1093/nar/gkx681
Preprint: https://doi.org/10.1101/129759
> While only recently developed, the ability to profile expression data in single cells (scRNA-Seq) has alr…
-
RNA-Skim: a rapid method for RNA-Seq quantification at transcript level
http://bioinformatics.oxfordjournals.org/content/30/12/i283.full.pdf+html
Li HD, Menon R, Omenn GS, Guan Y. (2014) The emerging…
-
Sorry to bother you. Now I only have **single-end** RNA seq data. When I runned the REDtools, the strand information always is 2. How can I infer the strand information? Which command I can use?
-
Hi I am interested in hosting this workflow on a Cromwell-enabled platform, but I've been seeing errors even trying it locally with both the stable and develop branches using these inputs derived from…
-
Hi,
I am using JACUSA2 to detect RNA editing events with paired RNA-seq and DNA-seq data.
However, DNA-seq and RNA-seq data were mapped to different reference genomes. The reference genomes wer…