-
Dear scMEGA team,
Thank you for developing this useful package.
I am working with Arabidopsis datasets - GSE173834 for the scATAC data and my own scRNA-seq data. When I integrated them, at the ste…
-
Hi, thanks for this nice tool!
I wanted to understand the usage of CORE-ATAC conceptually. So, for creating training-set peaks, we will need peaks regions identified from bulk-ATAC-seq? I have scATAC…
-
It looks like the function ac.tl.lsi is mostly just a call to `scipy.sparse.linalg.svds`.
https://github.com/scverse/muon/blob/d0e2c22896a6ea1c5617ed791ce4bf8b6ae1ab55/muon/_atac/tools.py#L52
I …
-
Dear respected author,
Hello! I am thrilled and deeply inspired after reading your work, as I am currently seeking methods to distinguish diploid and tetraploid cells in plant scRNA-seq data. I w…
-
I just followed the tutorial to run the example code, but the model was running with less than 10% GPU usage. Why is this happening and can it be improved?
-
Hi,
I'm very interested in the scVAEIT method and would like to ask if it is suitable for mosaic integration tasks where there are no globally shared features across batches. For example, in one ba…
-
Hi,
Thank you very much for sharing your work, I found it very interesting. When looking at the examples on your repo something confuses me, is it possible to integrate scRNA-seq and scATAC-seq wit…
-
Hello,
I've read the same topic previously posted, but am still interested in running demuxlet for snATAC-Seq which don't have UMI. Actually I've ran demuxlet for snATAC-Seq sample, and the result …
-
Thank you very much for the data provided on the figshare website, but I found that only the detailed cell annotation was provided in the early_placenta_atac file, and no other RNA or ATAC file was fo…
-
# Design (@brianraymor)
**In Progress**
## obs (Cell Metadata)
...
### genetic_ancestry_ontology_term_id
Key
genetic_ancestry_ontology_term_id
…