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Hello,
when running FragPipe in headless mode (analyzing a TMT experiment), I get weird TMT channel names. I put an example here: https://oc.embl.de/index.php/s/9iEiAtMw6j0hSMK
In the annotatio…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/cytolab/cytoMEM
Confirm the following by editing …
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**Describe the bug**
ProgressReportNumber in the Milestone Tracker is not showing milestones 3 and above for some studies.
**To Reproduce**
Steps to reproduce the behavior:
1. Go to projectLive-…
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### Abstract
Mass spectrometry (MS)-based single-cell proteomics (SCP) is an emerging field that requires a dedicated computational environment. `QFeatures` along with its extension `scp` allow for s…
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Hello,
I find this package awesome I would like to consult your opinion on its potential application to our specific problem/question and also report on some difficulties that I am getting on setti…
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Hi,
Recently I read your published paper "IceR improves proteome coverage and data completeness in global and single-cell proteomics", and I really appreciate your huge improvement on MaxQuant. The…
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Currently we have:
- (Germline) Exomes
- Single-Cell (RNA-seq)
What I see as missing
- Germline Genomes
- Molecular Tumor Conference (WES+RNA-seq)
Follow-up will be to create a ticket to…
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Please do all assays in a single PR.
Here are the `assay_type`s that might benefit:
```
'scRNA-Seq(10xGenomics)',
'AF',
'bulkATACseq',
'Cell D…
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Things to do:
- [ ] Create tables showing all data for bulk and single-cell experiments
- [ ] Compare and contrast early and late time points for vulnerabilities
- [ ] Identify reactions that are…