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Hi,
I have successfully used Canu for all my de novo assemblies and I am embarking on creating a snakemake-env for running Canu+medaka+diamond for viral metagenomic sequencing. Has anyone successf…
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Hi I am running a large dolphin feces nanopore sequencing fastq file and I am running into memory issues I think...
How much memory should I ask for to run this sample? Thanks! Katie
Canu v2.2
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Hello,
I am looking to have Smart-seq3 added as a Smart-like scRNA-seq library preparation protocol.
This is an existing synonym that was mistakenly listed under [Smart-3seq](http://www.ebi.ac.u…
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Hello!
Could you please provide me with the information on your plan about adapter trimming incorporating to the Dorado. It is the feature I rely on in my workflow and it was that I used in guppy. No…
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Beginning with sequence-based searches of the literature via PaperBLAST and using the sequences acquired from PomBase, UniProtKB
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https://mp.weixin.qq.com/s/-Bw5hcB8b6SqOQCEYrJN-Q
ixxmu updated
4 months ago
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After some thought / discussion, it may be best to define a few data structures, one to wrap the output of typical pLMs (i.e. ESM2, Protrans, ...), and data structures that wraps the protein vectors g…
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Dear Canu team,
I am currently using canu to assembly a highly repetetive fungal genome (>2/3 repetitive elemnts, total genome size roughly 127 Mbp). Since our cluster (SLURM) does not support auto…
AlWa1 updated
12 months ago
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Hello,
This is more of a usage guideline ask rather than any issue in Kallisto. Since the advent of the d-list option in Kallisto, I have been wondering if it should always be turned on when runnin…
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貼吧活動：(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
- Colla…